Package: scDECO 0.1.0

Anderson Bussing

scDECO: Estimating Dynamic Correlation

Implementations for two different Bayesian models of differential co-expression. scdeco.cop() fits the bivariate Gaussian copula model from Zichen Ma, Shannon W. Davis, Yen-Yi Ho (2023) <doi:10.1111/biom.13701>, while scdeco.pg() fits the bivariate Poisson-Gamma model from Zhen Yang, Yen-Yi Ho (2022) <doi:10.1111/biom.13457>.

Authors:Anderson Bussing [aut, cre], Yen-Yi Ho [aut, ths], Zichen Ma [aut], Zhen Yang [aut]

scDECO_0.1.0.tar.gz
scDECO_0.1.0.zip(r-4.7)scDECO_0.1.0.zip(r-4.6)scDECO_0.1.0.zip(r-4.5)
scDECO_0.1.0.tgz(r-4.6-any)scDECO_0.1.0.tgz(r-4.5-any)
scDECO_0.1.0.tar.gz(r-4.7-any)scDECO_0.1.0.tar.gz(r-4.6-any)
scDECO_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
scDECO/json (API)

# Install 'scDECO' in R:
install.packages('scDECO', repos = c('https://yenyiho-lab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yenyiho-lab/scdeco/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC - binary JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. JAGS was written with three aims in mind: * To have an engine for the BUGS language that runs on Unix * To be extensible, allowing users to write their own functions, distributions and samplers. * To be a plaftorm for experimentation with ideas in Bayesian modelling This package contains the 'jags' binary as well as the associated shared library modules loaded by the binary.
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

jagscpp

4.00 score 167 downloads 4 exports 20 dependencies

Last updated from:afa8d434c1. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK149
source / vignettesOK202
linux-release-x86_64OK142
macos-release-arm64OK172
macos-oldrel-arm64OK153
windows-develOK119
windows-releaseOK110
windows-oldrelOK102
wasm-releaseOK107

Exports:scdeco.copscdeco.pgscdeco.sim.copscdeco.sim.pg

Dependencies:clicodaexpmgenericsgluelatticelifecyclemagrittrMASSMatrixmsmmvtnormpillarpkgconfigrjagsrlangsurvivaltibbleutf8vctrs

scDECO-Copula

Rendered fromscDECO-Copula.Rmdusingknitr::rmarkdownon May 27 2026.

Last update: 2024-06-02
Started: 2024-05-01

scDECO-Poisson-Gamma

Rendered fromscDECO-Poisson-Gamma.Rmdusingknitr::rmarkdownon May 27 2026.

Last update: 2024-06-02
Started: 2024-05-01